Welcome to the forum...
It would have been more appropriate to post in the topic "Using Autopano Tour":http://www.autopano.net/forum/f18-using-autopano-tour
But never mind...
I'm trying to embed a video in my tour,
Does anyone know how i can do this?
Or has an idea about an alternative way?
You are using Autopano Tour (APT)? Then make sure you have the latest beta release - V1.1 beta 7:http://www.autopano.net/forum/t7116-apt-v1.1-beta
Then you specify video (.FLV) as the Display-Object (fill) within a Rectangular hotspot, as the Display-Object for a Point hotspot or as the Link-Object (target) of all types of hotspots.
Screenshots show selection of an FLV file as the Display-Object for a Rectangular hotspot, and what it looks like when you play the tour: