Is there any way to place a floor plan in place of the map. I am trying to show hot spots within an architectural survey showing all panoramic, movie and photo locations. Some of our projects have multiple levels and over 2000 panoramic, movie and photos.

Welcome to the forum...

Then you should look at PTP 2.0 (currently a public beta 1) which supports multi-level floor plans.

You can download here, and it's OK to have 1.8 and 2.0 installed on the same system:
http://www.kolor.com/download-autopano- ... tware.html

And you can upgrade via your Kolor web store account.